Publications
A total of 79 trainees were appointed to the training grant since 2006. They have authored 250 publications, including 125 first author publications.
45 trainees have graduated with a PhD and authored 205 publications, including 106 first author publications (~4.6 publications per trainee). One trainee has no publication; he finished his PhD early to work in industry.
4 trainees finished with a MS degree: 3 of them left without publications: 1 switched to Physics MS, 1 left program for personal reasons, 1 left for health reasons (the only one appointed to the current grant), 1 trainee finished with an MS to accept a job as an engineer at Nocatech, she coauthored one publication.
30 trainees appointed during this current grant are still pursuing their PhD research and 1 trainee is on a medical leave. They have so far published 45 publications, including 19 first author publications. 16 trainees are new entrants, including 11 who are currently taking their qualifying exams.
Former trainee Ian Gunsolus was interviewed on Minnesota’s KARE 11 News about chemicals used in the production of lithium batteries and their impact on soil bacteria. Working in the lab of training grant faculty member Christy Haynes, Gonsulas helped identify nickel and cobalt as the components most harmful to soil microbes.
Brittany Bennett
Bennett, B.D.; Brutinel, E.D.; and Gralnick, J.A. (2015) A ferrous iron exporter mediates iron resistance in Shewanella oneidensis MR-1. Appl. Environ. Microbiol. 81, 7938. PMCID: PMC4616933
Joseph Buchman
Kim, D.; Finkenstaedt-Quinn, S.; Hurley, K.; Buchman, J.T.; & Haynes, C.L. (2014) On-chip Evaluation of Platelet Adhesion and Aggregation upon Exposure to Mesoporous Silica Nanoparticles, Analyst, 139, 906. doi: 10.1039/C3AN01679J
Raju, R.; Chau, D.; Verfaillie, C.M.; & Hu, W.-S. (2013) The road to regenerative liver therapies: the triumphs, trials and tribulations. Biotechnol. Adv. 31, 1085. PMID: 24055818
James Christenson
Christenson, J., Jensen; M.; Seffernick, J.L.; Goblirsch, B.; Richman, J.; Mohamed, F.; Wilmot, C.; Wackett, L.P. (2016)Demonstration of an OleBCD protein complex in bacterial long-chain olefin biosynthesis. J. Bacteriol. (resubmission)
Heather Grundhofer
Grundhofer, H.M.; Kuhns, M.M.; & Arriaga, E.A. High Resolution Interrogation of Biological Systems via Mass Cytometry. Proteomics for Biological Discovery, 2nd Edition. Yates, J., Veenstra, T., Eds.; Wiley & Sons, In press.
Amy Hauck
Hauck, A., Olson, D. H., Burrill, J.S., and Bernlohr, D.A. (2015) Adipose Carbonylation And Mitochondrial Dysfunction in Protein Carbonylation-Principles, Analysis and Biological Implications (Q. Ros, Ed) Wiley & Co.
Hauck, A.K. & Bernlohr, D.A. (2016) Oxidative Stress and Lipotoxicity. J. Lipid Research, In press
Rachel Hillmer
Hillmer RA, Tsuda K, Rallapalli G, Asai S, Truman W, Papke MD, Sakakibara H, Jones JDG, Myers CL, Katagiri F. The Highly Buffered Arabidopsis Immune Signaling Network Hides the True Function of its Components. Submitted.
Hatsugai N, Hillmer R, Yamaoka S, Hara-Nishimura I, Katagiri F. The μ Subunit of Arabidopsis Adaptor Protein-2 Is Involved in Effector-Triggered Immunity Mediated by Membrane-Localized Resistance Proteins. (2016) Mol Plant Microbe Interact. Molecular Plant-Microbe Interactions. In press.
Hillmer RA, Katagiri F. Toward predictive modeling of large and complex biological signaling networks. (2016) Physiol Mol Plant Pathol. In press.
Bethke G, Thao A, Xiong G, Li B, Soltis NE, Hatsugai N, Hillmer RA, Katagiri F, Kliebenstein DJ, Pauly M, Glazebrook J. (2016) Pectin Biosynthesis Is Critical for Cell Wall Integrity and Immunity in Arabidopsis thaliana. Plant Cell. 28(2):537–56.
Hillmer RA. Systems biology for biologists. (2015) PLoS Pathog. 11(5):e1004786.
Kim Y, Tsuda K, Igarashi D, Hillmer RA, Sakakibara H, Myers CL, Katagiri F. (2014) Mechanisms underlying robustness and tunability in a plant immune signaling network. Cell Host Microbe. 15(1):84–94.
Sarah Hunt
Hunt, S.E., Dorfman, K.D., Segal, Y., and V.H. Barocas, A Computational Model of Flow and Species Transport in the Mesangium, AJP Renal, 310(3):F222-F229, 2016.
Bryan Jones
Jun Huang, Bryan J. Jones, Romas J. Kazlauskas (2015) Stabilization of an α/β-hydrolase by introducing proline residues: salicylic binding protein 2 from tobacco. Biochemistry 54, 4330-41;
Bryan Jones, Romas Kazlauskas (2015) The road to L. Nat. Chem. 6, 11-12h
Alissa Rauwerdink, Mark Lunzer, Titu Devamani, Bryan Jones, Joanna Mooney, Zhi-Jun Zhang, Jian-He Xu, Romas J. Kazlauskas, Antony M. Dean (2016) Evolution of a catalytic mechanism. Mol. Biol. Evol. 33, 000-000
Titu Devamani, Alissa M. Rauwerdink, Mark Lunzer, Bryan J. Jones, Joanna L. Mooney, Zhi-Jun Zhang, Maxilmilian Alaric O. Tan, Jian-He Xu, Antony M. Dean, Romas J. Kazlauskas (2016) Catalytic promiscuity of ancestral esterases and hydroxynitrile lyases. J. Am. Chem. Soc. 138, 1046-56;
Molly Kupfer
Kupfer ME and Ogle BM. Advanced imaging approaches for regenerative medicine: Emerging technologies for monitoring stem cell fate in vitro and in vivo. Biotechnology Journal. 10(10):1515-28. 2015.
Rebecca Maysonet Sanchez
Kane, A.L., E.D. Brutinel, H. Joo, R. Maysonet Sanchez, C.M. VanDrisse, N.J. Kotloski and J.A. Gralnick. 2016. Formate metabolism in Shewanella oneidensis generates proton motive force and prevents growth without an electron acceptor. J Bacteriol. 198(8):1337-1346. PMID: 26883823
Maria McClintock
McClintock MK, Kaznessis YN, Hackel BJ. (2016) Enterocin A mutants identified by saturation mutagenesis enhance potency towards vancomycin-resistant Enterococci. Biotechnol Bioeng. 113(2):414-23.
Daniel Mohr
Yoo D, Nguyen NC, Martin-Moreno L, Mohr DA, Carretero-Palacios S, Shaver J, Peraire J, Ebbesen TW, Oh SH. High-Throughput Fabrication of Resonant Metamaterials with Ultrasmall Coaxial Apertures via Atomic Layer Lithography. Nano Lett. 2016 Mar 9;16(3):2040-6. doi: 10.1021/acs.nanolett.6b00024. Epub 2016 Feb 29. PubMed PMID: 26910363; PubMed Central PMCID: PMC4789754.
Otto LM, Mohr DA, Johnson TW, Oh SH, Lindquist NC. Polarization interferometryfor real-time spectroscopic plasmonic sensing. Nanoscale. 2015 Mar 7;7(9):4226-33. doi: 10.1039/c4nr06586g. PubMed PMID: 25672889; PubMed Central PMCID: PMC4339257.
Lauren Otto
Kumar S, Johnson TW, Wood CK, Qu T, Wittenberg NJ, Otto LM, Shaver J, Long NJ, Victora RH, Edel JB, Oh SH. Template-Stripped Multifunctional Wedge and Pyramid Arrays for Magnetic Nanofocusing and Optical Sensing. ACS Appl Mater Interfaces. 2016 Feb 29. [Epub ahead of print] PubMed PMID: 26837912.
Freedman KJ, Otto LM, Ivanov AP, Barik A, Oh SH, Edel JB. Nanopore sensing at ultra-low concentrations using single-molecule dielectrophoretic trapping. Nat Commun. 2016 Jan 6;7:10217. doi: 10.1038/ncomms10217. PubMed PMID: 26732171; PubMed Central PMCID: PMC4729827.
Otto LM, Mohr DA, Johnson TW, Oh SH, Lindquist NC. Polarization interferometry for real-time spectroscopic plasmonic sensing. Nanoscale. 2015 Mar 7;7(9):4226-33. doi: 10.1039/c4nr06586g. PubMed PMID: 25672889; PubMed Central PMCID: PMC4339257.
Jose J, Kress S, Barik A, Otto LM, Shaver J, Johnson TW, Lapin ZJ, Bharadwaj P, Novotny L, Oh SH. Individual Template-Stripped Conductive Gold Pyramids for Tip-Enhanced Dielectrophoresis. ACS Photonics. 2014 May 21;1(5):464-470. Epub 2014 Apr 16. PubMed PMID: 25541619; PubMed Central PMCID: PMC4270414.
Barik A, Otto LM, Yoo D, Jose J, Johnson TW, Oh SH. Dielectrophoresis-enhanced plasmonic sensing with gold nanohole arrays. Nano Lett. 2014;14(4):2006-12. doi: 10.1021/nl500149h. Epub 2014 Mar 27. PubMed PMID: 24646075; PubMed Central PMCID: PMC4083195.
Lindquist NC, Johnson TW, Jose J, Otto LM, Oh SH. Ultrasmooth metallic films with buried nanostructures for backside reflection-mode plasmonic biosensing. Ann Phys. 2012 Nov;524(11):687-696. PubMed PMID: 24159227; PubMed Central PMCID: PMC3804426.
Carolyn Scott
Lindborg, B.A., Brekke, J.H., Vegoe, A.L., Ulrich, C.B., Haider, K.T., Subramaniam, S., Venhuizen, S.L., Eide, C.R., Orchard, P.J., Chen, W., Wang, Q., Pelaez, F., Scott, C.M., Kokkoli, E., Keirstead, S.A., Dutton, J.R., Tolar, J., and O’Brien, T.D. (2016). Rapid Induction of Cerebral Organoids from Human Induced Pluripotent Stem Cells Using a Chemically Defined Hydrogel and Defined Cell Culture Medium. Stem Cells Trans. Med., In press.
Scott, C.M., Forster C.L., and Kokkoli, E. (2015). 3D Cell Entrapment as a Function of the Weight Percent of Peptide-Amphiphile Hydrogels. Langmuir, 31 (22):6122-6129.
Lindborg, B.A., Brekke, J.H., Scott, C.M., Chai, Y.W., Ulrich, C., Sandquist, L., Kokkoli, E., and O’Brien, T.D. (2015). A Novel Chitosan-Hyaluronan Based Hydrogel-Hydrocolloid Supports In Vitro Culture and Differentiation of Human Mesenchymal Stem/Stromal Cells (MSCs). Tissue Eng. Part A, 21 (11-12):1952-1962.
Levine, R.M., Scott, C.M., and Kokkoli, E. (2013). Peptide Functionalized Nanoparticles for Nonviral Gene Delivery. Soft Matter, 9 (4):985-1004.
Scott Simpkins
Piotrowski JS, Simpkins SW, Li SC, Deshpande R, McIlwain SJ, Ong IM, Myers CL, Boone C, Andersen RJ, 2015, Chemical genomic profiling via barcode sequencing to predict compound mode of action,Methods Mol Biol, 1263, 299-318.
Lawrence Stern
Stern, L.A., Case, B.A., and Hackel, B.J., Alternative non-antibody protein scaffolds for molecular imaging of cancer Curr. Opin. Chem. Engr. 2013 2, 425-432. (PMID: 24358455)
Andrew Urick
W. C. Isley III, A. K. Urick, W. C. K. Pomerantz C. J. Cramer, The Prediction of 19F NMR in Proteins Mol.Pharm. Manuscript submitted
C. T. Gee, K. E. Arntson, A.K. Urick, N. K. Mishra, W. C. K. Pomerantz. 2016, Protein-Observed 19F NMR for Fragment Screening, Affinity Quantification, and Druggability Assessment Nat. Protoc. Accepted
A. K. Urick, L. M. L. Hawk, M. K. Cassel, N.K. Mishra, S.Liu, N. Adhikari, W. Zhang, C. O. dos Santos, J.L. Hall, and W. C. K. Pomerantz 2015, Dual screening of BPTF and Brd4 using protein-observed fluorine NMR uncovers new bromodomain probe molecules. ACS Chem. Biol. 10, 2246-56
N. K. Mishra, A. K. Urick, S. W. Ember, E. Schonbrunn, W. C. Pomerantz 2014 Fluorinated aromatic amino acids are sensitive probes for bromodomain ligand interactions, ACS Chem. Biol. 9 2755-60
Nicholas Baltes
Baltes NJ, Hummel AW, Konecna E, Cegan R, Bruns AN, Bisaro DM, Voytas DF. (2015). Conferring resistance to geminiviruses with the CRISPR-Cas prokaryotic immune system. Nature Plants. 15145: 1-4.
Cermak T, Baltes NJ, Cegan R, Zhang Y, Voytas DF (2015). High-frequency, precise modification of the tomato genome. Genome Biology. 16:232.
Lowder LG, Zhang D, Baltes NJ, Paul JW 3rd, Tang X, Zheng X, Voytas DF, Hsieh TF, Zhang Y, Qi Y (2015). A CRISPR/Cas9 toolbox for multiplexed plant genome editing and transcriptional regulation.Plant Physiol. 169:971-85.
Baltes NJ, Voytas DF (2015). Enabling plant synthetic biology through genome engineering. Trends in Biotechnology. 33:120-31.
Ali Z, Abul-faraj A, Li L, Ghosh N, Piatek M, Mahjoub A, Aouida M, Piatek A, Baltes NJ, Voytas DF, Dinesh-Kumar S, Hahfouz MM (2015). Efficient virus-mediated genome editing in plants using the CRISPR/Cas9 system. Mol. Plant. 8:1288-91.
Qi Y, Starker CG, Zhang F, Baltes NJ, Voytas DF (2014). Tailor-made mutations in Arabidopsis using zinc finger nucleases. Methods Mol Biol. 1062:193-209.
Baltes NJ, Gil-Humanes J, Cermak T, Atkins PA, Voytas DF (2014). DNA replicons for plant genome engineering. Plant Cell. 26:151-63.
Qi Y, Li X, Zhang Y, Starker CG, Baltes NJ, Zhang F, Sander JD, Reyon D, Joung JK, Voytas DF (2013).Targeted deletion and inversion of tandemly arrayed genes in Arabidopsis thaliana using zinc finger nucleases. G3. 3:1707-15.
Curtin SJ, Anderson JE, Starker CG, Baltes NJ, Mani D, Voytas DF, Stupar RM (2013). Targeted mutagenesis for functional analysis of gene duplication in legumes. Methods Mol Biol. 1069:25-42.
Curtin SJ, Zhang F, Sander JD, Haun WJ, Starker C, Baltes NJ, Reyon D, Dahlborg EJ, Goodwin MJ, Coffman AP, Dobbs D, Joung JK, Voytas DF, Stupar RM (2011). Targeted mutagenesis of duplicated genes in soybean with zinc finger nucleases. Plant Physiol. 156:466-73.
Sarah Bloch
Held, ME, Kolb, A, Perdue, S, Hsu, S, Bloch SE, Quin MB, Schmidt-Dannert, C, Engineering formation of multiple recombinant Eut protein nanocompartments in E. coli. SciReports 2016, 6:24359 DOI: 10.1038/srep24359
Bloch SE, Schmidt-Dannert C. Construction of a chimeric biosynthetic pathway for the de novo biosynthesis of rosmarinic acid in Eschericha coli. ChemBiochem 2014, 15:2393-2401.
Wawrzyn GT, Bloch SE, Schmidt-Dannert C. Discovery and characterization of terpenoid biosynthetic pathways of fungi. Methods Enzymol 2012; 515: 83-105. PMID: 22999171
Vick JE, Johnson ET, Choudhary S, Bloch SE, Lopez-Gellego F, Srivastava P, Tikh IB, Wawrzyn GT, Schmidt-Dannert C. Optimized compatible set of BioBrick™ vectors for metabolic pathway engineering. Appl Microbiol Biotechnol 2011; 92:1275–1286. PMID: 22033566
Stephan Cameron
Wackett, L.P., J. Frias, J.L. Seffernick, D. Sukovich, and S.M. Cameron (2007) Vibrio furnissii M1: Genomic and biochemical studies demonstrating the absence of an alkane-producing phenotype.Appl. Environ. Microbiol. 73: 7192-7198.
Cameron, S.M., K. Durchschein, J.E. Richman, M.J. Sadowsky and L.P. Wackett (2011) A new family of biuret hydrolases involved in s-triazine ring metabolism. ACS Catalysis 1(9):1075-1082.
Seffernick, J.L., J.S. Erickson, S.M. Cameron, S. Cho, A.G. Dodge, J. Richman, M.J. Sadowsky, and L.P. Wackett (2012) Defining the cyanuric acid hydrolase (AtzD)/barbiturase protein family. J. Bacteriol. 194:4579-4588.
Veronica Diaz-Rodriguez
Diaz-Rodriguez, V.; Ganusova, E.; Rappe, T. M.; Becker, J. M. & Distefano, M. D. (2015) Synthesis of Peptides Containing C-Terminal Esters Using Trityl Side-Chain Anchoring: Applications to the Synthesis of C-Terminal Ester Analogs of the Saccharomyces cerevisiae Mating Pheromone a-Factor.J. Org. Chem., 80, 11266. PMCID: in progress
Diaz-Rodriguez, V.; Mullen, D. G.; Ganusova, E.; Becker, J. M. & Distefano, M. D. (2012) Synthesis of Peptides Containing C-Terminal Methyl Esters Using Trityl Side-Chain Anchoring: Application to the Synthesis of a-Factor and a-Factor Analogs. Org. Lett., 14, 5648. PMCID: PMC3622458
Sarah Gruba
Finkenstaedt-Quinn, S.; Gruba, S.; & Haynes, C.L. (2016) Variations in Fusion Pore Formation in Cholesterol-Treated Platelets, Biophysical Journal, 110, 922 PMID: 26910428
Manning, B.M.; Meyer, A.F.; Gruba, S.M.; & Haynes, C.L. (2015) Single-Cell Analysis of Mast Cell Degranulation Induced by Airway Smooth Muscle-Secreted Chemokines, Biochimica et Biophysica Acta- General Subjects, 1850, 1862. PMID: 25986989
Gruba, S.M.; Koseoglu, S.; Meyer, A.F.; Meyer, B.M.; Maurer-Jones, M.A.; & Haynes, C.L. (2015) Platelet Membrane Variations and their Effects on δ-Granule Secretion Kinetics and Aggregation Spreading among Different Species, Biochimica et Biophysica Acta- Biomembranes, 1848, 1609. PMID: 25906946
Meyer, A.F.; Knutson, C.M.; Finkenstaedt-Quinn, S. A.; Gruba, S. M.; Meyer, B.M.; Thompson, J.W.; Maurer-Jones, M.A.; Halderman, S.; Tillman, A.S.; DeStefano, L.; & Haynes, C.L. (2014) Activities for Middle School Students To Sleuth a Chemistry Whodunit and Investigate the Scientific Method,Journal of Chemical Education, 91, 410.
Chan, J.D., Agbedanu, P.N., Zamanian, M., Gruba, S.M., Haynes, C.L., Day, T.A., Marchant, J.S., 2014, Death and Axes: Unexpected Ca2+ Entry Phenologs Predict New Anti-Schistosomal Agents,PLOS Pathogens, 10(2): e1003942.
Gruba, S.M., Meyer, A.F., Manning, B.M., Wang, Y., Thompson, J.W., Dalluge, J.J., and Haynes, C.L. (2014) Time- and Concentration-Dependent Effects of Exogenous Serotonin and Inflammatory Cytokines on Mast Cell Function, ACS Chemical Biology, 9, 503. PMID: 24586156
Ian Gunsolus
Hang, M.; Gunsolus, I.; Wayland, H.; Melby, E.; Mensch, A.; Hurley, K.; Pedersen, J.; Haynes, C.L.; Hamers, R. (2016) Impact of Nanoscale Lithium Nickel Manganese Cobalt Oxide (NMC) on the Bacterium Shewanella oneidensis MR-1, Chemistry of Materials, 28, 1092.
Gunsolus, I.L. & Haynes, C.L. (2016) Analytical Aspects of Nanotoxicology, Analytical Chemistry, 88 451. PMID: 26565109
Qiu, T. A.; Bozich, J. S.; Lohse, S. E.; Vartanian, A. M.; Jacob, L. M.; Meyer, B. M.; Gunsolus, I. L.; Niemuth, N. J.; Murphy, C. J.; Haynes, C. L.; & Klaper, R. D. (2015) Gene Expression Response of the Gram-negative Bacterium Shewanella oneidensis and the Water Flea Daphnia magna Exposed to Functionalized Gold Nanoparticles, Environmental Science: Nano, 2, 615.
Mousavi, M.P.S.; Gunsolus, I.; Perez de Jesus, C.E.; Lancaster, M.; Hussein, K.; Haynes, C.L.; Buhlmann, P. (2015) Dynamic Silver Speciation as Studied with Fluorous-phase Ion-selective Electrodes: Effect of Natural Organic Matter on the Toxicity and Speciation of Silver, Science of the Total Environment, 537, 453. PMID: 26284896
Jacobson, K.; Gunsolus, I.; Kuech, T.; Troiano, J.; Melby, E.; Lohse, S.; Hu, D.; Chrisler, W.; Murphy, C; Orr, G.; Geiger, F.; Haynes, C.L.; & Pedersen, J.A. (2015) Lipopolysaccharide Density and Structure Governs the Extent and Distance of Nanoparticle Interaction with Actual and Model Bacterial Outer Membranes, Environmental Science & Technology, 49, 10642. PMID: 26207769
Feng, Z.V., Gunsolus, I.L.; Qiu, T.A.; Hurley, K.R.; Nyberg, L.H.; Frew, H.; Johnson, K.P.; Vartanian, A.M.; Jacob, L.M.; Lohse, S.E.; Torelli, M.D.; Hamers, R.J.; Murphy, C.J.; & Haynes, C.L. (2015) Impacts of Gold Nanoparticle Charge and Ligand Type on Surface Binding and Toxicity to Gram-Negative and Gram-Positive Bacteria, Chemical Science, 6, 5186.
Gunsolus, I.L.; Mousavi, M.P.S.; Hussein, K.; Buhlmann, P.; & Haynes, C.L.; (2015) Effects of Humic and Fulvic Acids on Silver Nanoparticle Stability, Dissolution, and Toxicity, Environmental Science & Technology, 49, 8078. PMID: 26047330
Gunsolus, I.L.; Hu, D.; Mihai, C.; Lohse, S.E.; Lee, C.-S.; Torelli, M.D.; Hamers, R.J.; Murphy, C.J.; Orr, G.; and Haynes, C.L. (2014) Facile Method to Stain the Bacterial Cell Surface for Super-Resolution Fluorescence Microscopy, Analyst, 139(12) 3174-3178. PMID: 23701037
Maurer-Jones, M.A.; Gunsolus, I.; Meyer, B.; Christenson, C.; & Haynes, C.L. (2013) Impact of TiO2 Nanoparticles on Growth, Biofilm Formation, and Flavin Secretion in Shewanella oneidensis,Analytical Chemistry, 85, 5810. PMID: 23701037
Maurer-Jones, M.A.; Gunsolus, I.L.; Murphy, C.J.; & Haynes, C.L. (2013) Toxicity of Engineered Nanoparticles in the Environment, Analytical Chemistry, 85, 3036. PMID: 23427995
Timothy Johnson
Nicholls, D.P.; Oh S.H.; Johnson, T.W.; & Reitich, F. (2016) Launching surface plasmon waves via vanishingly small periodic gratings. J. Opt. Soc. Am. A Opt. Image. Sci. Vis. 33, 276. PMID: 26974896.
Kumar, S.; Johnson, T.W.; Wood, C.K.; Qu, T.; Wittenberg, N.J.; Otto, L.M.; Shaver, J.; Long, N.J.; Victora R.H.; Edel, J.B.; & Oh, S.H. (2016) Template-Stripped Multifunctional Wedge and Pyramid Arrays for Magnetic Nanofocusing and Optical Sensing. ACS Appl Mater Interfaces. [Epub ahead of print] PubMed PMID: 26837912.
Barik A, Cherukulappurath S, Wittenberg NJ, Johnson TW, Oh SH. Dielectrophoresis-Assisted Raman Spectroscopy of Intravesicular Analytes on Metallic Pyramids. Anal Chem. 2016 Feb 2;88(3):1704-10. doi:10.1021/acs.analchem.5b03719. Epub 2016 Jan 11. PubMed PMID: 26751756.
Yoo D, Johnson TW, Cherukulappurath S, Norris DJ, Oh SH. Template-Stripped Tunable Plasmonic Devices on Stretchable and Rollable Substrates. ACS Nano. 2015 Nov 24;9(11):10647-54. doi: 10.1021/acsnano.5b05279. Epub 2015 Oct 1. PubMed PMID: 26402066; PubMed Central PMCID: PMC4660390.
Otto LM, Mohr DA, Johnson TW, Oh SH, Lindquist NC.Polarization interferometry for real-time spectroscopic plasmonic sensing. Nanoscale. 2015 Mar 7;7(9):4226-33. doi: 10.1039/c4nr06586g. PubMed PMID: 25672889; PubMed Central PMCID: PMC4339257.
Kumar S, Cherukulappurath S, Johnson TW, Oh SH. Millimeter-Sized Suspended Plasmonic Nanohole Arrays for Surface-Tension-Driven Flow-Through SERS. Chem Mater. 2014 Nov 25;26(22):6523-6530. Epub 2014 Oct 20. PubMed PMID: 25678744; PubMed Central PMCID: PMC4311951.
Nicholls DP, Reitich F, Johnson TW, Oh SH. Fast high-order perturbation of surfaces methods for simulation of multilayer plasmonic devices and metamaterials. J Opt Soc Am A Opt Image Sci Vis. 2014 Aug 1;31(8):1820-31. doi: 10.1364/JOSAA.31.001820. PubMed PMID: 25121539.
Jose J, Kress S, Barik A, Otto LM, Shaver J, Johnson TW, Lapin ZJ, Bharadwaj P, Novotny L, Oh SH.Individual Template-Stripped Conductive Gold Pyramids for Tip-Enhanced Dielectrophoresis. ACS Photonics. 2014 May 21;1(5):464-470. Epub 2014 Apr 16. PubMed PMID: 25541619; PubMed Central PMCID: PMC4270414.
Wittenberg NJ, Johnson TW, Jordan LR, Xu X, Warrington AE, Rodriguez M, Oh SH. Formation of biomembrane microarrays with a squeegee-based assembly method. J Vis Exp. 2014 May 8;(87). doi: 10.3791/51501. PubMed PMID: 24837169; PubMed Central PMCID: PMC4032179.
Barik A, Otto LM, Yoo D, Jose J, Johnson TW, Oh SH. Dielectrophoresis-enhanced plasmonic sensing with gold nanohole arrays. Nano Lett. 2014;14(4):2006-12. doi: 10.1021/nl500149h. Epub 2014 Mar 27. PubMed PMID: 24646075; PubMed Central PMCID: PMC4083195.
Reitich F, Johnson TW, Oh SH, Meyer G. A fast and high-order accurate surface perturbation method for nanoplasmonic simulations: basic concepts, analytic continuation and applications. J Opt Soc Am A Opt Image Sci Vis. 2013 Nov 1;30(11):2175-87. doi: 10.1364/JOSAA.30.002175. PubMed PMID: 24322914.
Beams R, Smith D, Johnson TW, Oh SH, Novotny L, Vamivakas AN. Nanoscale fluorescence lifetime imaging of an optical antenna with a single diamond NV center. Nano Lett. 2013 Aug 14;13(8):3807-11. doi: 10.1021/nl401791v. Epub 2013 Jul 8. PubMed PMID: 23815462.
Im H, Bantz KC, Lee SH, Johnson TW, Haynes CL, Oh SH. Self-assembled plasmonic nanoring cavity arrays for SERS and LSPR biosensing. Adv Mater. 2013 May 21;25(19):2678-85. doi: 10.1002/adma.201204283. Epub 2013 Feb 22. PubMed PMID: 23436239.
Cherukulappurath S, Johnson TW, Lindquist NC, Oh SH. Template-stripped asymmetric metallic pyramids for tunable plasmonic nanofocusing. Nano Lett. 2013;13(11):5635-41. doi: 10.1021/nl403306n. Epub 2013 Oct 28. PubMed PMID: 24144067.
Lindquist NC, Johnson TW, Nagpal P, Norris DJ, Oh SH. Plasmonic nanofocusing with a metallic pyramid and an integrated C-shaped aperture. Sci Rep. 2013;3:1857. doi: 10.1038/srep01857. PubMed PMID: 23676841; PubMed Central PMCID: PMC3655335.
Lindquist NC, Johnson TW, Jose J, Otto LM, Oh SH. Ultrasmooth metallic films with buried nanostructures for backside reflection-mode plasmonic biosensing. Ann Phys. 2012 Nov;524(11):687-696. PubMed PMID: 24159227; PubMed Central PMCID: PMC3804426.
Johnson TW, Lapin ZJ, Beams R, Lindquist NC, Rodrigo SG, Novotny L, Oh SH. Highly reproducible near-field optical imaging with sub-20-nm resolution based on template-stripped gold pyramids. ACS Nano. 2012 Oct 23;6(10):9168-74. doi: 10.1021/nn303496g. Epub 2012 Sep 17. PubMed PMID: 22938087.
Wittenberg NJ, Johnson TW, Oh SH. High-density arrays of submicron spherical supported lipid bilayers. Anal Chem. 2012 Oct 2;84(19):8207-13. doi: 10.1021/ac3014274. Epub 2012 Sep 21. PubMed PMID: 22967217; PubMed Central PMCID: PMC3476481.
Wittenberg NJ, Im H, Johnson TW, Xu X, Warrington AE, Rodriguez M, Oh SH. Facile assembly of micro- and nanoarrays for sensing with natural cell membranes. ACS Nano. 2011 Sep 27;5(9):7555-64. doi: 10.1021/nn202554t. Epub 2011 Aug 17. PubMed PMID: 21842844; PubMed Central PMCID: PMC3183111.
Lindquist NC, Johnson TW, Norris DJ, Oh SH. Monolithic integration of continuously tunable plasmonic nanostructures. Nano Lett. 2011 Sep 14;11(9):3526-30. doi: 10.1021/nl2005737. Epub 2011 Aug 11. PubMed PMID: 21834564.
Im H, Lee SH, Wittenberg NJ, Johnson TW, Lindquist NC, Nagpal P, Norris DJ, Oh SH. Template-stripped smooth Ag nanohole arrays with silica shells for surface plasmon resonance biosensing. ACS Nano. 2011 Aug 23;5(8):6244-53. doi: 10.1021/nn202013v. Epub 2011 Jul 27. PubMed PMID: 21770414; PubMed Central PMCID: PMC3160512.
Nick Kotloski
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Adam Woodruff
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