BTI publications: June – September 2023

Publications by BTI faculty

Bohn, B., Chalupova, M., Staley, C., Holtan, S., Maakaron, J., Bachanova, V., & El Jurdi, N. (2023). Temporal variation in oral microbiome composition of patients undergoing autologous hematopoietic cell transplantation with keratinocyte growth factor. BMC Microbiol, 23(1), 258.

Cai, Z., Donahue, N., Jones, K. C., McNeill, K., Manaia, C., Novak, P. J., & Vikesland, P. J. (2023). Best Papers from 2022 published in the. Environ Sci Process Impacts, 25(7), 1141-1143.

Chang, Y. C., Lin, K., Baxley, R. M., Durrett, W., Wang, L., Stojkova, O., . . . Bielinsky, A. K. (2023). RNF4 and USP7 cooperate in ubiquitin-regulated steps of DNA replication. Open Biol, 13(8), 230068.

Chowdhury, S., Kennedy, J. J., Ivey, R. G., Murillo, O. D., Hosseini, N., Song, X., . . . Paulovich, A. G. (2023). Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer. Cell, 186(16), 3476-3498.e3435.

Costa, K. C., & Whitman, W. B. (2023). Model Organisms To Study Methanogenesis, a Uniquely Archaeal Metabolism. J Bacteriol, 205(8), e0011523.

El Jurdi, N., Holtan, S. G., Hoeschen, A., Velguth, J., Hillmann, B., Betts, B. C., . . . Shields-Cutler, R. (2023). Pre-transplant and longitudinal changes in faecal microbiome characteristics are associated with subsequent development of chronic graft-versus-host disease. Br J Haematol.

Golinski, A. W., Schmitz, Z. D., Nielsen, G. H., Johnson, B., Saha, D., Appiah, S., . . . Martiniani, S. (2023). Predicting and Interpreting Protein Developability Via Transfer of Convolutional Sequence Representation. ACS Synth Biol, 12(9), 2600-2615.

Gralnick, J. A., & Bond, D. R. (2023). Electron Transfer Beyond the Outer Membrane: Putting Electrons to Rest. Annu Rev Microbiol, 77, 517-539.

Hassan, A. Z., Ward, H. N., Rahman, M., Billmann, M., Lee, Y., & Myers, C. L. (2023). Dimensionality reduction methods for extracting functional networks from large-scale CRISPR screens. Mol Syst Biol, e11657.

Hill, E. R., Chun, C. L., Hamilton, K., & Ishii, S. (2023). High-Throughput Microfluidic Quantitative PCR Platform for the Simultaneous Quantification of Pathogens, Fecal Indicator Bacteria, and Microbial Source Tracking Markers. ACS ES T Water, 3(8), 2647-2658.

Hu, L. S., D’Angelo, F., Weiskittel, T. M., Caruso, F. P., Fortin Ensign, S. P., Blomquist, M. R., . . . Tran, N. L. (2023). Integrated molecular and multiparametric MRI mapping of high-grade glioma identifies regional biologic signatures. Nat Commun, 14(1), 6066.

Huang, S., Bergonzi, C., Smith, S., Hicks, R. E., & Elias, M. H. (2023). Field testing of an enzymatic quorum quencher coating additive to reduce biocorrosion of steel. Microbiol Spectr, e0517822.

Justyna, K., Das, R., Lorimer, E. L., Hu, J., Pedersen, J. S., Sprague-Getsy, A. M., . . . Distefano, M. D. (2023). Synthesis, Enzymatic Peptide Incorporation, and Applications of Diazirine-Containing Isoprenoid Diphosphate Analogues. Org Lett, 25(36), 6767-6772.

Kalambokidis, M., & Travisano, M. (2023). Multispecies interactions shape the transition to multicellularity. Proc Biol Sci, 290(2007), 20231055.

Kong, W., Qiu, L., Ishii, S., Jia, X., Su, F., Song, Y., . . . Wei, X. (2023). Contrasting response of soil microbiomes to long-term fertilization in various highland cropping systems. ISME Commun, 3(1), 81.

Lane, B. R., Anderson, H. M., Dicko, A. H., Fulcher, M. R., & Kinkel, L. L. (2023). Temporal variability in nutrient use among Streptomyces suggests dynamic niche partitioning. Environ Microbiol.

Li, J., Arnold, W. A., & Hozalski, R. M. (2023). Spatiotemporal Variability in. Environ Sci Technol, 57(37), 13959-13969.

Lu, M., Lee, Z., Lin, Y. C., Irfanullah, I., Cai, W., & Hu, W. S. (2023). Enhancing the production of recombinant adeno-associated virus in synthetic cell lines through systematic characterization. Biotechnol Bioeng.

McConnell, A., & Hackel, B. J. (2023). Protein engineering via sequence-performance mapping. Cell Syst, 14(8), 656-666.

Miley, K., Meyer-Kalos, P., Ma, S., Bond, D. J., Kummerfeld, E., & Vinogradov, S. (2023). Causal pathways to social and occupational functioning in the first episode of schizophrenia: uncovering unmet treatment needs. Psychol Med, 53(5), 2041-2049.

Morra, A., Schreurs, M. A. C., Andrulis, I. L., Anton-Culver, H., Augustinsson, A., Beckmann, M. W., . . . Investigators, k. (2023). Association of the CHEK2 c.1100delC variant, radiotherapy, and systemic treatment with contralateral breast cancer risk and breast cancer-specific survival. Cancer Med, 12(15), 16142-16162.

Ndinga-Muniania, C., Wornson, N., Fulcher, M. R., Borer, E. T., Seabloom, E. W., Kinkel, L., & May, G. (2023). Cryptic functional diversity within a grass mycobiome. PLoS One, 18(7), e0287990.

Qualls, D. A., Lambert, N., Caimi, P. F., Merrill, M. H., Pullarkat, P., Godby, R. C., . . . Salles, G. A. (2023). Tafasitamab and lenalidomide in large B cell lymphoma: real-world outcomes in a multicenter retrospective study. Blood.

Sakai, A., Jonker, A. J., Nelissen, F. H. T., Kalb, E. M., van Sluijs, B., Heus, H. A., . . . Huck, W. T. S. (2023). Cell-Free Expression System Derived from a Near-Minimal Synthetic Bacterium. ACS Synth Biol, 12(6), 1616-1623.

Seabloom, E. W., Caldeira, M. C., Davies, K. F., Kinkel, L., Knops, J. M. H., Komatsu, K. J., . . . Borer, E. T. (2023). Globally consistent response of plant microbiome diversity across hosts and continents to soil nutrients and herbivores. Nat Commun, 14(1), 3516.

van Hees, D., Hanneman, C., Paradis, S., Camara, A. G., Matsumoto, M., Hamilton, T., . . . Kodner, R. B. (2023). Patchy and Pink: Dynamics of a Chlainomonas sp. (Chlamydomonadales, Chlorophyta) algal bloom on Bagley Lake, North Cascades, WA. FEMS Microbiol Ecol.

Vitt, J. D., Hansen, E. G., Garg, R., & Bowden, S. D. (2023). Bacteria intrinsic to Medicago sativa (alfalfa) reduce Salmonella enterica growth in planta. J Appl Microbiol, 134(9).

Wackett, L. P. (2023a). A microbial evolutionary approach for a sustainable future. Microb Biotechnol, 16(10), 1895-1899.

Wackett, L. P. (2023b). Acid stress in microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology. Environ Microbiol Rep, 15(4), 335-336.

Wackett, L. P. (2023c). Cyanobacterial algal blooms: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology. Environ Microbiol, 25(7), 1375-1376.

Wackett, L. P. (2023d). Microbes at low substrate concentrations: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology. Environ Microbiol, 25(6), 1218-1219.

Wackett, L. P. (2023e). Web alert: Fabrication with microbial spores: An annotated selection of World Wide Web sites relevant to the topics in Microbial Biotechnology. Microb Biotechnol, 16(10), 2007-2008.

Wackett, L. P. (2023f). Web Alert: Solvent stress on environmental microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology. Environ Microbiol, 25(8), 1563-1564.

Wackett, L. P. (2023g). Web alert: Two-phase biocatalysis. Microb Biotechnol, 16(8), 1702.

Wackett, L. P., & McKnight. (2023). Web alert: Microbial biofilm catalysis. Microb Biotechnol, 16(7), 1577-1578.

Wang, H., Feyereisen, G. W., Wang, P., Rosen, C., Sadowsky, M. J., & Ishii, S. (2023). Impacts of biostimulation and bioaugmentation on woodchip bioreactor microbiomes. Microbiol Spectr, e0405322.

Wang, Q. Q., Sun, M., Tang, T., Lai, D. H., Liu, J., Maity, S., . . . Long, S. (2023). Functional screening reveals. mBio, 14(4), e0130923.

Wang, Z., Ishii, S., & Novak, P. J. (2023). Quantification of depth-dependent microbial growth in encapsulated systems. Microb Biotechnol.

Worner, K., Liu, Q., Maschhoff, K. R., & Hu, W. (2023). Identification of RNA-binding proteins’ direct effects on gene expression via the degradation tag system. RNA, 29(10), 1453-1457.

Zhang, Q., Xuan, Q., Wang, C., Shi, C., Wang, X., Ma, T., . . . Chen, C. (2023). Bioengineered “Molecular Glue”-Mediated Tumor-Specific Cascade Nanoreactors with Self-Destruction Ability for Enhanced Precise Starvation/Chemosynergistic Tumor Therapy. ACS Appl Mater Interfaces, 15(35), 41271-41286.

Zhang, W., Dong, H., Wang, X., Zhang, L., Chen, C., & Wang, P. (2023). Engineered. ACS Appl Mater Interfaces.

Zhu, B., Du, Z., Dai, Y., Kitaguchi, T., Behrens, S., & Seelig, B. (2023). Nanodroplet-Based Reagent Delivery into Water-in-Fluorinated-Oil Droplets. Biosensors (Basel), 13(8).

Zlotorzynska, M., Chea, N., Eure, T., Alkis Ramirez, R., Blazek, G. T., Czaja, C. A., . . . Grigg, C. T. (2023). Residential social vulnerability among healthcare personnel with and without severe acute respiratory coronavirus virus 2 (SARS-CoV-2) infection in Five US states, May-December 2020. Infect Control Hosp Epidemiol, 1-7.