BTI publications: June – September 2023
Publications by BTI faculty
Bohn, B., Chalupova, M., Staley, C., Holtan, S., Maakaron, J., Bachanova, V., & El Jurdi, N. (2023). Temporal variation in oral microbiome composition of patients undergoing autologous hematopoietic cell transplantation with keratinocyte growth factor. BMC Microbiol, 23(1), 258. https://doi.org/10.1186/s12866-023-03000-x
Cai, Z., Donahue, N., Jones, K. C., McNeill, K., Manaia, C., Novak, P. J., & Vikesland, P. J. (2023). Best Papers from 2022 published in the. Environ Sci Process Impacts, 25(7), 1141-1143. https://doi.org/10.1039/d3em90018e
Chang, Y. C., Lin, K., Baxley, R. M., Durrett, W., Wang, L., Stojkova, O., . . . Bielinsky, A. K. (2023). RNF4 and USP7 cooperate in ubiquitin-regulated steps of DNA replication. Open Biol, 13(8), 230068. https://doi.org/10.1098/rsob.230068
Chowdhury, S., Kennedy, J. J., Ivey, R. G., Murillo, O. D., Hosseini, N., Song, X., . . . Paulovich, A. G. (2023). Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer. Cell, 186(16), 3476-3498.e3435. https://doi.org/10.1016/j.cell.2023.07.004
Costa, K. C., & Whitman, W. B. (2023). Model Organisms To Study Methanogenesis, a Uniquely Archaeal Metabolism. J Bacteriol, 205(8), e0011523. https://doi.org/10.1128/jb.00115-23
El Jurdi, N., Holtan, S. G., Hoeschen, A., Velguth, J., Hillmann, B., Betts, B. C., . . . Shields-Cutler, R. (2023). Pre-transplant and longitudinal changes in faecal microbiome characteristics are associated with subsequent development of chronic graft-versus-host disease. Br J Haematol. https://doi.org/10.1111/bjh.19016
Golinski, A. W., Schmitz, Z. D., Nielsen, G. H., Johnson, B., Saha, D., Appiah, S., . . . Martiniani, S. (2023). Predicting and Interpreting Protein Developability Via Transfer of Convolutional Sequence Representation. ACS Synth Biol, 12(9), 2600-2615. https://doi.org/10.1021/acssynbio.3c00196
Gralnick, J. A., & Bond, D. R. (2023). Electron Transfer Beyond the Outer Membrane: Putting Electrons to Rest. Annu Rev Microbiol, 77, 517-539. https://doi.org/10.1146/annurev-micro-032221-023725
Hassan, A. Z., Ward, H. N., Rahman, M., Billmann, M., Lee, Y., & Myers, C. L. (2023). Dimensionality reduction methods for extracting functional networks from large-scale CRISPR screens. Mol Syst Biol, e11657. https://doi.org/10.15252/msb.202311657
Hill, E. R., Chun, C. L., Hamilton, K., & Ishii, S. (2023). High-Throughput Microfluidic Quantitative PCR Platform for the Simultaneous Quantification of Pathogens, Fecal Indicator Bacteria, and Microbial Source Tracking Markers. ACS ES T Water, 3(8), 2647-2658. https://doi.org/10.1021/acsestwater.3c00169
Hu, L. S., D’Angelo, F., Weiskittel, T. M., Caruso, F. P., Fortin Ensign, S. P., Blomquist, M. R., . . . Tran, N. L. (2023). Integrated molecular and multiparametric MRI mapping of high-grade glioma identifies regional biologic signatures. Nat Commun, 14(1), 6066. https://doi.org/10.1038/s41467-023-41559-1
Huang, S., Bergonzi, C., Smith, S., Hicks, R. E., & Elias, M. H. (2023). Field testing of an enzymatic quorum quencher coating additive to reduce biocorrosion of steel. Microbiol Spectr, e0517822. https://doi.org/10.1128/spectrum.05178-22
Justyna, K., Das, R., Lorimer, E. L., Hu, J., Pedersen, J. S., Sprague-Getsy, A. M., . . . Distefano, M. D. (2023). Synthesis, Enzymatic Peptide Incorporation, and Applications of Diazirine-Containing Isoprenoid Diphosphate Analogues. Org Lett, 25(36), 6767-6772. https://doi.org/10.1021/acs.orglett.3c02736
Kalambokidis, M., & Travisano, M. (2023). Multispecies interactions shape the transition to multicellularity. Proc Biol Sci, 290(2007), 20231055. https://doi.org/10.1098/rspb.2023.1055
Kong, W., Qiu, L., Ishii, S., Jia, X., Su, F., Song, Y., . . . Wei, X. (2023). Contrasting response of soil microbiomes to long-term fertilization in various highland cropping systems. ISME Commun, 3(1), 81. https://doi.org/10.1038/s43705-023-00286-w
Lane, B. R., Anderson, H. M., Dicko, A. H., Fulcher, M. R., & Kinkel, L. L. (2023). Temporal variability in nutrient use among Streptomyces suggests dynamic niche partitioning. Environ Microbiol. https://doi.org/10.1111/1462-2920.16498
Li, J., Arnold, W. A., & Hozalski, R. M. (2023). Spatiotemporal Variability in. Environ Sci Technol, 57(37), 13959-13969. https://doi.org/10.1021/acs.est.3c01767
Lu, M., Lee, Z., Lin, Y. C., Irfanullah, I., Cai, W., & Hu, W. S. (2023). Enhancing the production of recombinant adeno-associated virus in synthetic cell lines through systematic characterization. Biotechnol Bioeng. https://doi.org/10.1002/bit.28562
McConnell, A., & Hackel, B. J. (2023). Protein engineering via sequence-performance mapping. Cell Syst, 14(8), 656-666. https://doi.org/10.1016/j.cels.2023.06.009
Miley, K., Meyer-Kalos, P., Ma, S., Bond, D. J., Kummerfeld, E., & Vinogradov, S. (2023). Causal pathways to social and occupational functioning in the first episode of schizophrenia: uncovering unmet treatment needs. Psychol Med, 53(5), 2041-2049. https://doi.org/10.1017/S0033291721003780
Morra, A., Schreurs, M. A. C., Andrulis, I. L., Anton-Culver, H., Augustinsson, A., Beckmann, M. W., . . . Investigators, k. (2023). Association of the CHEK2 c.1100delC variant, radiotherapy, and systemic treatment with contralateral breast cancer risk and breast cancer-specific survival. Cancer Med, 12(15), 16142-16162. https://doi.org/10.1002/cam4.6272
Ndinga-Muniania, C., Wornson, N., Fulcher, M. R., Borer, E. T., Seabloom, E. W., Kinkel, L., & May, G. (2023). Cryptic functional diversity within a grass mycobiome. PLoS One, 18(7), e0287990. https://doi.org/10.1371/journal.pone.0287990
Qualls, D. A., Lambert, N., Caimi, P. F., Merrill, M. H., Pullarkat, P., Godby, R. C., . . . Salles, G. A. (2023). Tafasitamab and lenalidomide in large B cell lymphoma: real-world outcomes in a multicenter retrospective study. Blood. https://doi.org/10.1182/blood.2023021274
Sakai, A., Jonker, A. J., Nelissen, F. H. T., Kalb, E. M., van Sluijs, B., Heus, H. A., . . . Huck, W. T. S. (2023). Cell-Free Expression System Derived from a Near-Minimal Synthetic Bacterium. ACS Synth Biol, 12(6), 1616-1623. https://doi.org/10.1021/acssynbio.3c00114
Seabloom, E. W., Caldeira, M. C., Davies, K. F., Kinkel, L., Knops, J. M. H., Komatsu, K. J., . . . Borer, E. T. (2023). Globally consistent response of plant microbiome diversity across hosts and continents to soil nutrients and herbivores. Nat Commun, 14(1), 3516. https://doi.org/10.1038/s41467-023-39179-w
van Hees, D., Hanneman, C., Paradis, S., Camara, A. G., Matsumoto, M., Hamilton, T., . . . Kodner, R. B. (2023). Patchy and Pink: Dynamics of a Chlainomonas sp. (Chlamydomonadales, Chlorophyta) algal bloom on Bagley Lake, North Cascades, WA. FEMS Microbiol Ecol. https://doi.org/10.1093/femsec/fiad106
Vitt, J. D., Hansen, E. G., Garg, R., & Bowden, S. D. (2023). Bacteria intrinsic to Medicago sativa (alfalfa) reduce Salmonella enterica growth in planta. J Appl Microbiol, 134(9). https://doi.org/10.1093/jambio/lxad204
Wackett, L. P. (2023a). A microbial evolutionary approach for a sustainable future. Microb Biotechnol, 16(10), 1895-1899. https://doi.org/10.1111/1751-7915.14331
Wackett, L. P. (2023b). Acid stress in microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology. Environ Microbiol Rep, 15(4), 335-336. https://doi.org/10.1111/1758-2229.13185
Wackett, L. P. (2023c). Cyanobacterial algal blooms: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology. Environ Microbiol, 25(7), 1375-1376. https://doi.org/10.1111/1462-2920.16061
Wackett, L. P. (2023d). Microbes at low substrate concentrations: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology. Environ Microbiol, 25(6), 1218-1219. https://doi.org/10.1111/1462-2920.16059
Wackett, L. P. (2023e). Web alert: Fabrication with microbial spores: An annotated selection of World Wide Web sites relevant to the topics in Microbial Biotechnology. Microb Biotechnol, 16(10), 2007-2008. https://doi.org/10.1111/1751-7915.14345
Wackett, L. P. (2023f). Web Alert: Solvent stress on environmental microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology. Environ Microbiol, 25(8), 1563-1564. https://doi.org/10.1111/1462-2920.16063
Wackett, L. P. (2023g). Web alert: Two-phase biocatalysis. Microb Biotechnol, 16(8), 1702. https://doi.org/10.1111/1751-7915.14314
Wackett, L. P., & McKnight. (2023). Web alert: Microbial biofilm catalysis. Microb Biotechnol, 16(7), 1577-1578. https://doi.org/10.1111/1751-7915.14299
Wang, H., Feyereisen, G. W., Wang, P., Rosen, C., Sadowsky, M. J., & Ishii, S. (2023). Impacts of biostimulation and bioaugmentation on woodchip bioreactor microbiomes. Microbiol Spectr, e0405322. https://doi.org/10.1128/spectrum.04053-22
Wang, Q. Q., Sun, M., Tang, T., Lai, D. H., Liu, J., Maity, S., . . . Long, S. (2023). Functional screening reveals. mBio, 14(4), e0130923. https://doi.org/10.1128/mbio.01309-23
Wang, Z., Ishii, S., & Novak, P. J. (2023). Quantification of depth-dependent microbial growth in encapsulated systems. Microb Biotechnol. https://doi.org/10.1111/1751-7915.14341
Worner, K., Liu, Q., Maschhoff, K. R., & Hu, W. (2023). Identification of RNA-binding proteins’ direct effects on gene expression via the degradation tag system. RNA, 29(10), 1453-1457. https://doi.org/10.1261/rna.079669.123
Zhang, Q., Xuan, Q., Wang, C., Shi, C., Wang, X., Ma, T., . . . Chen, C. (2023). Bioengineered “Molecular Glue”-Mediated Tumor-Specific Cascade Nanoreactors with Self-Destruction Ability for Enhanced Precise Starvation/Chemosynergistic Tumor Therapy. ACS Appl Mater Interfaces, 15(35), 41271-41286. https://doi.org/10.1021/acsami.3c06871
Zhang, W., Dong, H., Wang, X., Zhang, L., Chen, C., & Wang, P. (2023). Engineered. ACS Appl Mater Interfaces. https://doi.org/10.1021/acsami.3c09123
Zhu, B., Du, Z., Dai, Y., Kitaguchi, T., Behrens, S., & Seelig, B. (2023). Nanodroplet-Based Reagent Delivery into Water-in-Fluorinated-Oil Droplets. Biosensors (Basel), 13(8). https://doi.org/10.3390/bios13080768
Zlotorzynska, M., Chea, N., Eure, T., Alkis Ramirez, R., Blazek, G. T., Czaja, C. A., . . . Grigg, C. T. (2023). Residential social vulnerability among healthcare personnel with and without severe acute respiratory coronavirus virus 2 (SARS-CoV-2) infection in Five US states, May-December 2020. Infect Control Hosp Epidemiol, 1-7. https://doi.org/10.1017/ice.2023.131
