BTI Publications September – October 2024
Boatman, S., Khan, M. H., Ganesan, N., Nalluri-Butz, H., Kohn, J., Troester, A.,…Staley, C. (2024). Anastomotic leak occurs independently from microbiota shifts associated with surgical bowel preparation. Sci Rep, 14(1), 21711. https://doi.org/10.1038/s41598-024-72520-x
Carlson, R. P., Beck, A. E., Benitez, M. G., Harcombe, W. R., Mahadevan, R., & Gedeon, T. (2024). Cell Geometry and Membrane Protein Crowding Constrain Growth Rate, Overflow Metabolism, Respiration, and Maintenance Energy. bioRxiv. https://doi.org/10.1101/2024.08.21.609071
Corbella, M., Bravo, J., Demkiv, A. O., Calixto, A. R., Sompiyachoke, K., Bergonzi, C.,…Kamerlin, S. C. L. (2024). Catalytic Redundancies and Conformational Plasticity Drives Selectivity and Promiscuity in Quorum Quenching Lactonases. JACS Au, 4(9), 3519-3536. https://doi.org/10.1021/jacsau.4c00404
Fredrickson, G., Florczak, K., Barrow, F., Mahmud, S., Dietsche, K., Wang, H.,…Revelo, X. S. (2024). TREM2 macrophages mediate the beneficial effects of bariatric surgery against MASH. Hepatology. https://doi.org/10.1097/HEP.0000000000001098
Frosch, A. E. P., Musiime, V., Staley, C., Conroy, A. L., Rutebarika, D., Ategeka, G., & Cusick, S. E. (2024). Safety and efficacy of iron supplementation with 3 months of daily ferrous sulphate in children living with HIV and mild-to-moderate anaemia in Uganda: a double-blind, randomised, placebo-controlled trial. Lancet HIV, 11(11), e727-e735. https://doi.org/10.1016/S2352-3018(24)00238-8
Gonia, S., Heisel, T., Miller, N., Haapala, J., Harnack, L., Georgieff, M. K.,…Swanson, M. H. (2024). Maternal oral probiotic use is associated with decreased breastmilk inflammatory markers, infant fecal microbiome variation, and altered recognition memory responses in infants-a pilot observational study. Front Nutr, 11, 1456111. https://doi.org/10.3389/fnut.2024.1456111
Haynes, K. A., Andrews, L. B., Beisel, C. L., Chappell, J., Cuba Samaniego, C. E., Dueber, J. E.,…Young, E. (2024). Ten Years of the Synthetic Biology Summer Course at Cold Spring Harbor Laboratory. ACS Synth Biol, 13(9), 2635-2642. https://doi.org/10.1021/acssynbio.4c00276
Johnson, K. E., Heisel, T., Allert, M., Fürst, A., Yerabandi, N., Knights, D.,…Blekhman, R. (2024). Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome. Cell Genom, 4(10), 100638. https://doi.org/10.1016/j.xgen.2024.100638
Lévrier, A., Capin, J., Mayonove, P., Karpathakis, I. I., Voyvodic, P., DeVisch, A.,…Bonnet, J. (2024). Split Reporters Facilitate Monitoring of Gene Expression and Peptide Production in Linear Cell-Free Transcription-Translation Systems. ACS Synth Biol, 13(10), 3119-3127. https://doi.org/10.1021/acssynbio.4c00353
Michalska-Smith, M., Schlatter, D. C., Pombubpa, N., Castle, S. C., Grandy, A. S., Borer, E. T.,…Kinkel, L. L. (2024). Plant community richness and foliar fungicides impact soil. Front Microbiol, 15, 1452534. https://doi.org/10.3389/fmicb.2024.1452534
Moutsoglou, D., Syal, A., Lopez, S., Nelson, E. C., Chen, L., Kabage, A. J.,…Staley, C. (2024a). Novel Microbial Engraftment Trajectories following Microbiota Transplantation Therapy in Ulcerative Colitis. J Crohns Colitis. https://doi.org/10.1093/ecco-jcc/jjae142
Schuweiler, D., Ordinola-Zapata, R., Dietz, M., Lima, B. P., Noblett, W. C., & Staley, C. (2024). Microbial diversity in primary endodontic infections: demographics and radiographic characteristics. Clin Oral Investig, 28(11), 591. https://doi.org/10.1007/s00784-024-05982-y
Scott, A., Khoruts, A., Freeman, M. L., Beilman, G., Ramanathan, K., Bellin, M. D., & Trikudanathan, G. (2024a). Successful Use of Fecal Microbiota Transplantation in Management of Nonobstructive Recurrent Cholangitis Following Total Pancreatectomy and Islet Autotransplant. ACG Case Rep J, 11(10), e01527. https://doi.org/10.14309/crj.0000000000001527
Sorenson, C., & Adamala, K. P. (2024). Laws of thought in living cells. Cell, 187(18), 4830-4832. https://doi.org/10.1016/j.cell.2024.08.005
Teigen, L. M., McCarter, S. J., Ziegert, Z., Staley, C., Grant, K. M., Gupta, V. K.,…Ross, O. A. (2024). Taxonomic intestinal microbiota differences in Lewy body spectrum disease and cohabitant controls. Parkinsonism Relat Disord, 129, 107176. https://doi.org/10.1016/j.parkreldis.2024.107176
Vaughn, B. P., Khoruts, A., & Fischer, M. (2024). Diagnosis and Management of Clostridioides difficile in Inflammatory Bowel Disease. Am J Gastroenterol. https://doi.org/10.14309/ajg.0000000000003076
Venkatachalapathy, H., Brzakala, C., Batchelor, E., Azarin, S. M., & Sarkar, C. A. (2024). Inertial effect of cell state velocity on the quiescence-proliferation fate decision. NPJ Syst Biol Appl, 10(1), 111. https://doi.org/10.1038/s41540-024-00428-3
Wang, H., Strock, J., Ranaivoson, A., & Ishii, S. (2024). Bioremediation of nitrate in agricultural drainage ditches: Impacts of low-grade weirs on microbiomes and nitrogen cycle gene abundance. Sci Total Environ, 955, 177070. https://doi.org/10.1016/j.scitotenv.2024.177070
Wissbroecker, K. B., Zmuda, A. J., Karumanchi, H., & Niehaus, T. D. (2024). Biochemical and genomic evidence for converging metabolic routes of metformin and biguanide breakdown in environmental Pseudomonads. J Biol Chem, 107935. https://doi.org/10.1016/j.jbc.2024.107935
Zhang, R., Kang, S. Y., Gaascht, F., Peña, E. L., & Schmidt-Dannert, C. (2024). Design of a Genetically Programmable and Customizable Protein Scaffolding System for the Hierarchical Assembly of Robust, Functional Macroscale Materials. ACS Synth Biol. https://doi.org/10.1021/acssynbio.4c00587
Zhang, X., Arnold, W. A., Wright, N., Novak, P. J., & Guest, J. S. (2024). Prioritization of Early-Stage Research and Development of a Hydrogel-Encapsulated Anaerobic Technology for Distributed Treatment of High Strength Organic Wastewater. Environ Sci Technol. https://doi.org/10.1021/acs.est.4c05389